Publications

Manthey Google Scholar Profile
Data used in publications

  1. Manthey JD, Moyle RG & Boissinot S. In Press. Multiple and independent phases of transposable element amplification in the genomes of Piciformes (woodpeckers and allies). Genome Biology and Evolution

  2. Boissinot S, Bourgeois Y, Manthey JD & Ruggiero RP. In Press. The mobilome of reptiles: evolution, structure, function. Cytogenetics and Genome Research

  3. Reyes-Velasco J, Manthey JD, Freilich X & Boissinot S. 2018. Diversification of African tree frogs (Genus Leptopelis) in the Highlands of Ethiopia. Molecular Ecology 27: 2256-2270. [link]

  4. Reyes-Velasco J, Manthey JD, Bourgeois Y, Freilich X & Boissinot S. 2018. Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian Highlands with the use of genome-wide SNP data. PLoS One. [link]

  5. Andersen MJ, Manthey JD, Naikatini A & Moyle RG. 2017. Conservation genomics of the silktail (Aves: Lamprolia victoriae) suggests the need for increased protection of native forest on the Natewa Peninsula, Fiji. Conservation Genetics 18: 1277-1285. [link]

  6. Manthey JD, Reyes-Velasco J, Freilich X & Boissinot S. 2017. Diversification in a biodiversity hotspot: genomic variation in the river frog Amietia nutti across the Ethiopian Highlands. Biological Journal of the Linnean Society 122: 801-813. [link]

  7. Manthey JD, Moyle RG, Gawin DF, Rahman MA, Ramji MFS & Sheldon FH. 2017. Genomic phylogeography of the endemic Mountain Blackeye of Borneo (Chlorocharis emiliae): montane and lowland populations differ in patterns of Pleistocene diversification. Journal of Biogeography 44: 2272-2283. [link]

  8. Moyle RG, Manthey JD, Hosner PA, Rahman M, Lakim M & Sheldon FH. 2017. A genome wide assessment of stages of elevational parapatry in Bornean passerine birds reveals no introgression: implications for processes and pattern of speciation. PeerJ 5: e3335. [link]

  9. Manthey JD, Geiger M & Moyle RG. 2017. Relationships of morphological groups in the northern flicker superspecies complex (Colaptes auratus & C. chrysoides). Systematics and Biodiversity 15: 183-191. [link]

  10. Manthey JD, Tollis M, Lemmon AR, Lemmon EM & Boissinot S. 2016. Diversification in wild populations of the model organism Anolis carolinensis: a genome-wide phylogeographic investigation. Ecology and Evolution 6: 8115-8125. [link]

  11. Moyle RG, Oliveros CH, Andersen MJ, Hosner PA, Benz BW, Manthey JD, Travers SL, Brown RM & Faircloth BC. 2016. Tectonic collision and uplift of Wallacea triggered the global songbird radiation. Nature Communications 7: 12709. [pdf]

  12. Manthey JD, Campillo LC, Burns KJ & Moyle RG. 2016. Comparison of target capture and restriction-site associated DNA sequencing for phylogenomics: a test in cardinalid tanagers (Aves, Genus Piranga). Systematic Biology 65: 640-650. [pdf]

  13. Manthey JD & Robbins MB. 2016. Genomic insights into hybridization in a localized region of sympatry between pewee sister species (Contopus sordidulus x C. virens) and their chromosomal patterns of differentiation. Avian Research 7: 6. [pdf]

  14. Manthey JD, Robbins MB & Moyle RG. 2016. A genomic investigation of the putative contact zone between divergent Brown Creeper (Certhia americana) lineages: chromosomal patterns of genetic differentiation. Genome 59: 115-125. [pdf]

  15. Klicka LB, Campillo LC, Manthey JD & Qu Y. 2015. Comparative phylogeography and niche modeling for three species complexes of SE China (Paradoxornis spp., Pycnonotus spp., Spizixos spp.) Current Zoology 61: 943-950. [link]

  16. Manthey JD & Moyle RG. 2015. Isolation by environment in White-breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach. Molecular Ecology 24: 3628-3638. [link]

  17. Manthey JD, Klicka J, & Spellman GM. 2015. Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana. Heredity 115: 165-172. [pdf]

  18. Manthey JD, Campbell LP, Saupe EE, Soberón J, Hensz CM, Myers CE, Owens HL, Ingenloff K, Peterson AT, Barve N, Lira-Noriega A, Barve V. 2015. A test of niche centrality as a determinant of population trends and conservation status in threatened and endangered North American birds. Endangered Species Research 26: 201-208. [pdf]

  19. Manthey JD, Klicka J & Spellman GM. 2014. Effects of climate change on the evolution of Brown Creeper (Certhia americana) lineages. The Auk: Ornithological Advances 131: 559-570. [pdf]

  20. *Lira-Noriega A & *Manthey JD. 2014. Relationship of genetic diversity and niche centrality: a survey and analysis. Evolution 68: 1082-1093. *co-first authors [link]

  21. Manthey JD & Spellman GM. 2014. Increased differentiation and reduced gene flow in sex chromosomes relative to autosomes between lineages of the brown creeper (Certhia americana). Journal of Avian Biology 45: 149-156. [pdf]

  22. Manthey JD, Klicka J & Spellman GM. 2012. Is gene flow promoting the reversal of Pleistocene divergence in the Mountain Chickadee (Poecile gambeli)? PLoS One 7: e49218. [pdf]

  23. Siemens DH, Duvall-Jisha J, Jacobs J, Manthey J, Haugen R & Matzner S. 2012. Water deficiency induces stress-tolerance-chemical defense evolutionary tradeoff that may help explain local range limits in plants. Oikos 121: 790-800.

  24. Manthey JD, Klicka J & Spellman GM. 2011. Isolation driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae). Molecular Ecology 20: 4371-4384. [pdf]

  25. Manthey JD, Klicka J & Spellman GM. 2011. Cryptic diversity in a widespread North American songbird: phylogeography of the Brown Creeper (Certhia americana). Molecular Phylogenetics and Evolution 58: 502-512. [pdf]